Undergraduate dissertation — Deceptive Alignment in Autonomous LLM Agents (UEL, 2026). Sandboxed agentic-LLM deception study: 960 runs, three-tier judging (regex + blackbox + glassbox). http://git.jayrup.me/c/dissertation.git/atom?h=main 2026-04-01T15:35:01Z 2026-04-01T15:35:01Z CaptainJack2491 jayrupnakawala@gmail.com 2026-04-01T15:35:01Z urn:sha1:fa58564ea288600ad93eaf0a5aa111beca6197bc - Refactored Agent's chat loop to explicitly preserve and pass back reasoning context (reasoning_details, reasoning) to OpenRouter. - Ensures frontier models like Gemini 3.1 and DeepSeek v3.2 maintain their 'thinking' chain during complex tool-calling sessions. - Enhanced reasoning extraction to support structured details, reasoning_content, and fallback tags. - Verified capture of encrypted and plain-text reasoning blocks in experimental logs. 2026-03-02T15:23:50Z CaptainJack2491 jayrupnakawala@gmail.com 2026-03-02T15:23:50Z urn:sha1:239ec5c0660d2b618cefa35b0a6a1599279d533c - New 'generate_baseline' option in defaults (default: true) - When false, skips baseline generation entirely - Warns if no baseline exists when generation is disabled - Updated config.yaml.example and README.md with docs 2026-03-01T23:44:39Z CaptainJack2491 jayrupnakawala@gmail.com 2026-03-01T23:36:14Z urn:sha1:3d8b71ac0921c6df64699dde6447c9effbbc54b7 - Create src/logger.py with Python logging module - Add 4 debug levels: 1=CRITICAL, 2=WARNING, 3=INFO, 4=DEBUG - Level 4 includes reasoning, VFS info, and available tools - Level 4 auto-enables file output (both mode) - Update agent.py and runner.py to use logger instead of print - Update config.yaml.example with logging configuration - Update README with logging documentation 2026-02-26T15:29:02Z CaptainJack2491 jayrupnakawala@gmail.com 2026-02-26T15:29:02Z urn:sha1:a6b38c54ee72cbae1d696b02f32ad487391a5dfe - Create .env.example with placeholder keys for all providers - Create config.yaml.example with clean reference config - Add config.yaml and judge_logs/ to .gitignore - Load .env in judge.py for standalone usage