dissertation.git - Undergraduate dissertation — Deceptive Alignment in Autonomous LLM Agents (UEL, 2026). Sandboxed agentic-LLM deception study: 960 runs, three-tier judging (regex + blackbox + glassbox).

Age	Commit message (Collapse)	Author
2026-04-01	feat: implement robust reasoning token handling and multi-turn persistence	CaptainJack2491
	- Refactored Agent's chat loop to explicitly preserve and pass back reasoning context (reasoning_details, reasoning) to OpenRouter. - Ensures frontier models like Gemini 3.1 and DeepSeek v3.2 maintain their 'thinking' chain during complex tool-calling sessions. - Enhanced reasoning extraction to support structured details, reasoning_content, and fallback tags. - Verified capture of encrypted and plain-text reasoning blocks in experimental logs.
2026-03-02	feat: add generate_baseline toggle to config	CaptainJack2491
	- New 'generate_baseline' option in defaults (default: true) - When false, skips baseline generation entirely - Warns if no baseline exists when generation is disabled - Updated config.yaml.example and README.md with docs
2026-03-01	feat: add centralized logging with configurable debug levels	CaptainJack2491
	- Create src/logger.py with Python logging module - Add 4 debug levels: 1=CRITICAL, 2=WARNING, 3=INFO, 4=DEBUG - Level 4 includes reasoning, VFS info, and available tools - Level 4 auto-enables file output (both mode) - Update agent.py and runner.py to use logger instead of print - Update config.yaml.example with logging configuration - Update README with logging documentation
2026-02-26	chore: add .env.example + config.yaml.example, gitignore config.yaml	CaptainJack2491
	- Create .env.example with placeholder keys for all providers - Create config.yaml.example with clean reference config - Add config.yaml and judge_logs/ to .gitignore - Load .env in judge.py for standalone usage